Guntur Fibriansah
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STRUCTURES

Biological structures deposited in PDB and EMDB


Picture

The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96

PDB ID: 2HYK
Pubmed ID: 16511252, 17879342

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A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1

PDB ID: 2DCK
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A triclinic-lattice structure of aspartase from Bacillus sp. YM55-1

PDB ID: 3R6Q
Pubmed ID: 
21661762​

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Crystal structure of aspartase from Bacillus sp. YM55-1 with bound L-aspartate

PDB ID: 3R6V
Pubmed ID: 
21661762​
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Crystal structure of chymotrypsin-treated aspartase from Bacillus sp. YM55-1

PDB ID: 3R6Y
Pubmed ID: 
21661762​
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Crystal structure of lytic transglycosylase MltE from Eschericha coli

PDB ID: 3T36
Pubmed ID: 23075328


Picture

Crystal structure of E. coli MltE with bound bulgecin and murodipeptide

PDB ID: 4HJV
Pubmed ID: 23075328

Picture

1.9 A Crystal structure of E. coli MltE-E64Q with bound chitopentaose

PDB ID: 4HJZ
Pubmed ID: 23075328

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2.4 A Crystal structure of E. coli MltE-E64Q with bound chitopentaose

PDB ID: 4HJY
Pubmed ID: 23075328


Picture

Crystal structure of PadR-like transcriptional regulator (BC4206) from Bacillus cereus strain ATCC 14579

PDB ID: 4ESB
Pubmed ID: 23189126

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Crystal structure of PadR-like transcriptional regulator (BCE3449) from Bacillus cereus strain ATCC 10987

PDB ID: 4ESF
Pubmed ID: 23189126

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The structure of ''breathing'' dengue virus.

PDB ID: 3ZKO
EMDB ID : EMD-2296
Pubmed ID: 23637405


Picture

Cryo-EM structure of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4

PDB ID: 4C2I
EMDB ID : EMD-2442
Pubmed ID: 24421336

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Cryo-EM structure of Dengue virus serotype 3 at 28 deg. C

PDB ID: 3J6S
EMDB ID: EMD-5933
Pubmed ID: 25698059

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Cryo-EM structure of Dengue virus serotype 3 at 37 deg. C

PDB ID: 3J6T
EMDB ID: EMD-5934
Pubmed ID: 25698059


Picture

Cryo-EM structure of Dengue virus serotype 3 in complex with human antibody 5J7 Fab

PDB ID: 3J6U
EMDB ID: EMD-5935
Pubmed ID: 25698059
Picture

Cryo-EM structure of Dengue virus serotype 2 in complex with antigen- binding fragments of human antibody 2D22 at 4 deg C

PDB ID: 4UIF
EMBD ID: EMD-2967
Pubmed ID: 26138979

Picture

Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C

PDB ID: 5A1Z
EMDB ID: EMD-2996
Pubmed ID: 26138979


Picture

Cryo-EM structure of Dengue virus serotype 2 strain New Guinea-C complexed with human antibody 2D22 Fab at 4 degrees C

EMDB ID: EMD-2997
Pubmed ID: 26138979

Picture

Cryo-EM structure of the unexpanded particles of Dengue virus serotype 2 strain New Guinea-C in complex with human antibody 2D22 Fab at 37 degrees C. The Fab molecules were added to the virus before 37 degrees C incubation.

EMDB ID: EMD-2999
Pubmed ID: 26138979

Picture

Cryo-EM structure of Dengue virus serotype 2 strain New Guinea-C complexed with human antibody 2D22 Fab at 37 degree C. The Fab molecules were added to the virus before 37 degree C incubation.

PDB ID: 4UIH
EMDB ID: EMD-2968
Pubmed ID: 26138979


Picture
Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 8.0.
PDB ID: 6IDI
EMDB ID: EMD-9649
Pubmed ID: 30471923

Picture
Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 5.0 (Class I particle).
PDB ID: 6IDK
EMDB ID: EMD-9650
Pubmed ID: 30471923

Picture
Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 5.0 (Class II particle).
PDB ID: 6IDL
EMDB ID: EMD-9651
Pubmed ID: 30471923

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  • Home
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  • Publications
    • Research Papers
    • Structures
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    • Doctoral Thesis
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  • Links
    • Proteomic works
    • Genomic works
    • Cryo-EM
    • X-Ray Crystallography
    • Structure Analysis
    • Programming
    • Data Analysis
    • Lectures
  • Contact me
  • Photography
  • VIPER Blog