Structure Visualization Software |
UCSF Chimera
(https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/) |
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Single Particle Reconstruction |
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Localized reconstructions
(http://www.nature.com/articles/ncomms9843) [Reference] (http://www.opic.ox.ac.uk/wiki/index.php?title=Localized_reconstruction) [Methods] |
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EMAN2 - Tilt Validation
(http://blake.bcm.edu/emanwiki/EMAN2/Programs/e2tiltvalidate.py) (http://blake.bcm.edu/emanwiki/OxfordWs2012) [Tutorial] |
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Particle picking
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ETHAN
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Tomography reconstruction
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IMOD (Etomo):
(https://www.youtube.com/user/BL3DEMC) [ Tutorial video] Tomo alignment: (http://bio3d.colorado.edu/imod/doc/etomoTutorial.html) Subtomo averaging (PEET): (http://bio3d.colorado.edu/PEET/) (http://bio3d.colorado.edu/ftp/PEET/tutorials/) [Tutorial Video] (http://bio3d.colorado.edu/ftp/PEET/sampleDatasets/ ) [Tutorial Dataset] Dynamo (https://wiki.dynamo.biozentrum.unibas.ch/w/index.php/Getting_started) (https://wiki.dynamo.biozentrum.unibas.ch/w/index.php/Pdf_tutorials) (https://www.youtube.com/watch?v=VPIdxpxNqWw) [Video: Particle picking] https://www.youtube.com/watch?v=SWKyHrLETPQ&feature=youtu.be) [Video: subtomo averaging] |
Model fitting
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