Collaborative Computational Project for Electron cryo-Microscopy

CCP-EM
http://www.ccpem.ac.uk/

EM Software

http://www.emdatabank.org/emsoftware.html

Single particle reconstruction

RELION
http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page

EMAN
http://blake.bcm.edu/emanwiki/EMAN/

EMAN 2.1
http://blake.bcm.edu/emanwiki/EMAN2/

XMIPP
http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/WebHome

SPADE & ETHAN
https://www.cs.helsinki.fi/group/bimcom/spade/

Tomographic reconstruction

Dynamo
https://wiki.dynamo.biozentrum.unibas.ch/w/index.php/Main_Page
IMOD
http://bio3d.colorado.edu/imod/

Structure visualization software

UCSF Chimera
https://www.cgl.ucsf.edu/chimera/

Model fitting

O
http://xray.bmc.uu.se/alwyn/TAJ/Home.html

To download the software:

http://xray.bmc.uu.se/alwyn/HowToO/HowToO_frameset.html